This talk covers important recent advances in analyzing the stochasticity of stationary and non-stationary time series. We give an overview on the Markovian methods for analyzing stochastic data in time and scale by inference of an evolution equation. Based on this reconstruction of the underlying stochastic process, we nvestigate the cascade of information from large scales to small scales (related to intermittency of the time series), multiscale correlation functions and level crossing properties. We use the method to investigate complex fluctuations in heart interbeats, financial time series, rough surfaces, turbulence, and seismic time series.