| ComputeLinkParameters {GraphAlignment} | R Documentation |
Compute the optimal scoring parameters (link score) for a given alignment.
ComputeLinkParameters(A, B, P, lookupLink, clamp=TRUE)
A |
adjacency matrix for network A |
B |
adjacency matrix for network B |
P |
permutation vector |
lookupLink |
link bin lookup table |
clamp |
clamp values to range when performing bin lookups |
The return value is a list containing the self link score matrix (lsSelf) and the link score matrix (ls).
ex<-GenerateExample(dimA=22, dimB=22, filling=.5, covariance=.6,
symmetric=TRUE, numOrths=10, correlated=seq(1,18))
pinitial<-InitialAlignment(psize=34, r=ex$r, mode="reciprocal")
lookupLink<-seq(-2,2,.5)
linkParams<-ComputeLinkParameters(ex$a, ex$b, pinitial, lookupLink)