R: Create initial alignment

InitialAlignment {GraphAlignment}

R Documentation

Create initial alignment

Description

Create a permutation for an initial alignment. Either "random" or "reciprocal" may be specified as the mode argument.

Usage

InitialAlignment(psize, r=NA, mode="random")

Arguments

`psize`	size of the alignment
`r`	node similarity score matrix (required for mode 'reciprocal')
`mode`	type of initial alignment

Details

The return value is a permutation vector of the specified size.

Examples

  ex<-GenerateExample(dimA=22, dimB=22, filling=.5, covariance=.6,
    symmetric=TRUE, numOrths=10, correlated=seq(1,18))
  
  pinitial<-InitialAlignment(psize=34, r=ex$r, mode="reciprocal")

[Package GraphAlignment version 1.0-0 Index]